Methods of Data Evaluation and Databases MDE-4-PK
Subject Methods of Data Evaluation and Databases (MDE)
Guarantee RNDr. Pavel Řehulka, Ph.D.
Department Katedra molekulární patologie a biologie
Specialization NO
Profiling subject NO
Theory profiling subject NO
Final exam NO
Multi semestral subject NO
Subject is guaranted by other school NO
Optionality Povinný
Clasification Zkouška
Credits 5
Recommended year/semester 1/1
Number of weeks 14

Topics

Celkem (h) Př. Cv. Lab. Sem. Kurzy Praxe Stáže Soustř. Exkurze Terén SP Konzultace PV
Basic terms and definitions 4 0 0 0 0 0 0 0 0 0 0 2 2 0
Nucleotide sequence databases 4 0 0 0 0 0 0 0 0 0 0 2 2 0
Protein sequence databases 4 0 0 0 0 0 0 0 0 0 0 2 2 0
Tools for sequence databases 24 20 0 0 0 0 0 0 0 0 0 2 2 0
Databases of proteomic experimental data 4 0 0 0 0 0 0 0 0 0 0 2 2 0
Basics of LC-MS and protein identification 4 0 0 0 0 0 0 0 0 0 0 2 2 0
LC-MS data processing 24 20 0 0 0 0 0 0 0 0 0 2 2 0

Literature


Doporučená:
Claverie J-M, Notredame C. Bioinformatics For Dummies, 2nd Edition. Available from: https://www.wiley.com/en-cz/Bioinformatics+For+Dummies%2C+2nd+Edition-p-9780470089859
Baxevanis AD et al. Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins, 3rd Edition. Available from: https://www.wiley.com/en-cz/Bioinformatics%3A+A+Practical+Guide+to+the+Analysis+of+Genes+and+Proteins%2C+3rd+Edition-p-9780471478782
Eidhammer I et al. Computational methods for mass spectrometry proteomics. Chichester, England; Hoboken, NJ: John Wiley & Sons; 2007.
Liquid Chromatography Techniques. In Westermeier R. et al. Proteomics in Practice. John Wiley & Sons, Ltd; 2008. 151–213. DOI: 10.1002/9783527622290.ch6.
Mass Spectrometry. In Westermeier R. et al. Proteomics in Practice. John Wiley & Sons, Ltd; 2008. 215–72. DOI: 10.1002/9783527622290.ch7.

Study results verification

zkouška

Scope of consultation